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mic-dkfz/nnunet
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I have a labeled MRI dataset in NIfTI format. Walk me through the complete nnU-Net workflow from dataset preparation to training a model to running inference on new scans.
How do I configure the three environment paths nnU-Net requires for raw data, preprocessed data, and saved model results?
nnU-Net automatically chooses between 2D, 3D full-resolution, and 3D low-resolution architectures. How does it make that decision and how do I override it?
I want to cite nnU-Net in a medical imaging paper. What is the correct citation and which benchmark configurations should I report?
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